From 5eb38df22d5fea84c463561a199ff860edf9ac5a Mon Sep 17 00:00:00 2001 From: iomgaa Date: Thu, 15 Oct 2026 23:42:36 -0400 Subject: [PATCH] =?UTF-8?q?build:=20uv=20=E5=B7=A5=E5=85=B7=E9=93=BE?= =?UTF-8?q?=E3=80=81=E6=A3=80=E6=9F=A5=E5=91=BD=E4=BB=A4=E4=B8=8E=E6=8F=90?= =?UTF-8?q?=E4=BA=A4=E5=89=8D=E6=A3=80=E6=9F=A5?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - pyproject：Python 3.12、ruff、pyright strict、pytest（live/gpu 标记）、import-linter； 首条导入契约：cadx 不导入 torch、sam2（design 0001 第 7 条） - Makefile：sync/fmt/test/check - pre-commit：gitleaks、拦截 data/runs/reference/reference-pdf/models 与 .env、ruff format - 空包 cadx 与一项导入测试，让 make check 能跑通 Co-Authored-By: Claude Opus 5.5 --- .env.example | 4 + .gitignore | 28 +++ .pre-commit-config.yaml | 21 ++ .python-version | 1 + Makefile | 22 +++ config/.gitkeep | 0 prompts/.gitkeep | 0 pyproject.toml | 64 ++++++ scripts/.gitkeep | 0 src/cadx/__init__.py | 1 + src/cadx/py.typed | 0 tests/test_package.py | 7 + uv.lock | 418 ++++++++++++++++++++++++++++++++++++++++ 13 files changed, 566 insertions(+) create mode 100644 .env.example create mode 100644 .gitignore create mode 100644 .pre-commit-config.yaml create mode 100644 .python-version create mode 100644 Makefile create mode 100644 config/.gitkeep create mode 100644 prompts/.gitkeep create mode 100644 pyproject.toml create mode 100644 scripts/.gitkeep create mode 100644 src/cadx/__init__.py create mode 100644 src/cadx/py.typed create mode 100644 tests/test_package.py create mode 100644 uv.lock diff --git a/.env.example b/.env.example new file mode 100644 index 0000000..e6c7265 --- /dev/null +++ b/.env.example @@ -0,0 +1,4 @@ +# 本地配置示例：只列变量名，值留空；真实值只放本地 .env 或环境变量，.env 不进 git。 +# 模型服务怎么选、参数多少，等 llm 模块落地后写进 config/，这里只放连接与密钥。 +# +# 目前还没有任何代码读这些变量；llm 模块的任务书会确定最终的变量名。 diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..5dbd9b0 --- /dev/null +++ b/.gitignore @@ -0,0 +1,28 @@ +# 本地材料：不进 git（AGENTS.md 硬性约束 1、3），pre-commit 另有一道拦截。 +# 末尾不加斜杠，这样同名的符号链接也能匹配。 +/data +/runs +/reference +/reference-pdf +/models +.env +.env.* +!.env.example + +# 上下文压缩前的交接快照，只在本地留存 +/research-wiki/scratch/*compact* + +.venv/ +__pycache__/ +*.py[cod] +.pytest_cache/ +.ruff_cache/ +.pyright/ +.import_linter_cache/ +.coverage +htmlcov/ +dist/ +*.egg-info/ + +# Claude Code 运行时文件 +/.claude/scheduled_tasks.lock diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..709c9c4 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,21 @@ +repos: + - repo: https://github.com/gitleaks/gitleaks + rev: v8.30.1 + hooks: + - id: gitleaks + - repo: local + hooks: + # AGENTS.md 硬性约束 1、3：即使 git add -f 也不能提交本地材料。 + - id: local-only-paths + name: data/、runs/、reference/、models/ 和 .env 不进提交 + language: fail + entry: "禁止提交本地材料：" + files: '^(data|runs|reference|reference-pdf|models)(/|$)|(^|/)\.env(\.[^/]+)?$' + exclude: '^\.env\.example$' + types_or: [file, symlink] + # 使用 uv.lock 中的同一版本，不另装一份 ruff。 + - id: ruff-format + name: ruff format --check + language: system + entry: uv run --frozen ruff format --check --force-exclude + types_or: [python, pyi] diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..4c12b7b --- /dev/null +++ b/Makefile @@ -0,0 +1,22 @@ +.PHONY: sync fmt test check + +sync: + uv sync + +fmt: + uv run ruff check --fix . + uv run ruff format . + +# 不花钱、不需要 GPU 的测试；make test 和 make check 共用。 +FREE_TESTS = not live and not gpu + +test: + uv run pytest -m "$(FREE_TESTS)" + +# 每行单独执行；任何一步非零退出，make 就停止。 +check: + uv run ruff check . + uv run ruff format --check . + uv run pyright + uv run lint-imports + uv run pytest -m "$(FREE_TESTS)" diff --git a/config/.gitkeep b/config/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/prompts/.gitkeep b/prompts/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..b341baa --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,64 @@ +[project] +name = "cadx" +version = "0.0.0" +description = "胰腺囊性肿瘤多模态会诊诊断的研究代码" +requires-python = ">=3.12" +dependencies = [] + +[dependency-groups] +dev = [ + "ruff>=0.6", + "pyright>=1.1.380", + "pytest>=8.3", + "import-linter>=2.1", + "pre-commit>=4.0", +] + +[build-system] +requires = ["hatchling>=1.26"] +build-backend = "hatchling.build" + +[tool.hatch.build.targets.wheel] +packages = ["src/cadx"] + +[tool.ruff] +line-length = 100 +target-version = "py312" +src = ["src", "tests", "scripts"] +extend-exclude = ["research-wiki", "reference", "reference-pdf", "runs", "data"] + +[tool.ruff.lint] +select = ["E", "W", "F", "I", "UP", "B", "BLE", "S", "SIM", "RUF"] +# 允许注释和文档字符串里的中文全角标点。 +ignore = ["RUF001", "RUF002", "RUF003"] + +[tool.ruff.lint.per-file-ignores] +"tests/**" = ["S101"] + +[tool.pyright] +include = ["src", "tests", "scripts"] +pythonVersion = "3.12" +typeCheckingMode = "strict" +venvPath = "." +venv = ".venv" + +[tool.pytest.ini_options] +testpaths = ["tests"] +addopts = "--strict-markers --import-mode=importlib" +markers = [ + "live: 真实模型调用，花钱，需要 .env 里的密钥", + "gpu: 需要 CUDA 显卡（MedSAM2 分割）", +] + +# 导入边界。改契约先改 research-wiki/explanation/结构.md，再改这里； +# 不靠 ignore_imports 让违规通过。规划中的契约见结构.md 第四节，模块落地时随任务书加入。 +[tool.importlinter] +root_packages = ["cadx"] +include_external_packages = true + +[[tool.importlinter.contracts]] +# design 0001：torch 与 MedSAM2 只许出现在分割模块（模块落地时在这里放行 cadx.segment）。 +name = "torch 与 sam2 不进 cadx" +type = "forbidden" +source_modules = ["cadx"] +forbidden_modules = ["torch", "sam2"] diff --git a/scripts/.gitkeep b/scripts/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/src/cadx/__init__.py b/src/cadx/__init__.py new file mode 100644 index 0000000..a1760b4 --- /dev/null +++ b/src/cadx/__init__.py @@ -0,0 +1 @@ +"""CADx-4：胰腺囊性肿瘤多模态会诊诊断的研究代码。""" diff --git a/src/cadx/py.typed 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