iomgaa
c7373efde2
- 新模块 review（组织层，只依赖 library、answers、runs）：把一次构建和它装入的 CEUS 运行整理成医生可读的文件夹（CSV 带 BOM、说明与报告转 PDF、图片视频逐字节拷贝）， 入口 scripts/review_pack.py + config/review_pack.yaml。任务书 03。 - 读 CEUS 运行目录（failed.csv、结果目录、关键帧文件）从 build 挪进 runs，build 与 review 都经它读；failed.csv 读取在边界上收严（步号须为整数、视频号不重复、列数固定）。 - library、answers 补只读函数；import-linter 增 review 契约。 - 文档：guides/医生核对包.md（过一轮硕士生阅读），结构.md 第三至八部分同步。 Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
168 lines
6.2 KiB
TOML
168 lines
6.2 KiB
TOML
[project]
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name = "cadx"
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version = "0.0.0"
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description = "胰腺囊性肿瘤多模态会诊诊断的研究代码"
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requires-python = ">=3.12"
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dependencies = [
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"matplotlib>=3.11.2",
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"medsam2",
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"numpy>=2.5.4",
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"opencv-python-headless>=5.0.0.93",
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"openpyxl>=3.1.5",
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"pillow>=12.3.0",
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"pydantic>=2.14.1",
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"pyyaml>=6.0.3",
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"scipy>=1.18.1",
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]
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[dependency-groups]
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dev = [
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"ruff>=0.6",
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"pyright>=1.1.380",
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"pytest>=8.3",
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"import-linter>=2.1",
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"pre-commit>=4.0",
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"types-pyyaml>=6.0.12.20260906",
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"types-openpyxl>=3.1.5.20260827",
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]
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[tool.uv]
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# 只在本机和远程服务器（都是 Linux x86_64）上跑；只为这一种平台解析依赖，
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# 免得 torch 的各平台 CUDA 轮子都要下载一遍。
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environments = ["sys_platform == 'linux' and platform_machine == 'x86_64'"]
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[tool.uv.sources]
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medsam2 = { path = "reference/MedSAM2", editable = true }
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[build-system]
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requires = ["hatchling>=1.26"]
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build-backend = "hatchling.build"
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[tool.hatch.build.targets.wheel]
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packages = ["src/cadx"]
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[tool.ruff]
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line-length = 100
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target-version = "py312"
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src = ["src", "tests", "scripts"]
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extend-exclude = ["research-wiki", "reference", "reference-pdf", "runs", "data"]
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[tool.ruff.lint]
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select = ["E", "W", "F", "I", "UP", "B", "BLE", "S", "SIM", "RUF"]
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# 允许注释和文档字符串里的中文全角标点。
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ignore = ["RUF001", "RUF002", "RUF003"]
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[tool.ruff.lint.per-file-ignores]
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"tests/**" = ["S101"]
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[tool.pyright]
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include = ["src", "tests", "scripts"]
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pythonVersion = "3.12"
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typeCheckingMode = "strict"
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venvPath = "."
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venv = ".venv"
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# medsam2 以 setuptools 的导入钩子方式可编辑安装，pyright 跟不过去，直接指给它源码目录。
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extraPaths = ["tests", "scripts", "reference/MedSAM2"]
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[tool.pytest.ini_options]
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testpaths = ["tests"]
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# 测试辅助（假交付包生成器）放在 tests/ 下，按普通模块导入；scripts/ 也在路径上，
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# ceus_align_review 引用 ceus_quant 的配置模型（直接运行脚本时 scripts/ 本来就在 sys.path 上）。
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pythonpath = ["tests", "scripts"]
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addopts = "--strict-markers --import-mode=importlib"
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markers = [
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"live: 真实模型调用，花钱，需要 .env 里的密钥",
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"gpu: 需要 CUDA 显卡（MedSAM2 分割）",
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]
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# 导入边界。改契约先改 research-wiki/explanation/结构.md，再改这里；
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# 不靠 ignore_imports 让违规通过。规划中的契约见结构.md 第五部分，模块落地时随任务书加入。
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[tool.importlinter]
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root_packages = ["cadx"]
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include_external_packages = true
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[[tool.importlinter.contracts]]
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# design 0001：torch 与 MedSAM2 只许出现在分割模块。import-linter 不能写「除 segment 外的 cadx」
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# （只有 ignore_imports 能开例外），所以逐个列出其余模块；新模块落地时加进 source_modules。
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name = "cadx 里只有 segment 引用 torch、sam2"
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type = "forbidden"
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source_modules = [
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"cadx.delivery", "cadx.library", "cadx.answers", "cadx.runs", "cadx.build", "cadx.ceus",
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"cadx.review",
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]
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forbidden_modules = ["torch", "sam2"]
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[[tool.importlinter.contracts]]
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# 结构.md 第三部分依赖表：segment 不引用其他 cadx 模块（它不认识分屏和绿框）。
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name = "segment 不引用其他 cadx 模块"
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type = "forbidden"
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source_modules = ["cadx.segment"]
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forbidden_modules = [
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"cadx.delivery", "cadx.library", "cadx.answers", "cadx.runs", "cadx.build", "cadx.review",
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"cadx.ceus", "cadx.llm", "cadx.ledger", "cadx.consult", "cadx.evaluate", "cadx.verdicts",
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]
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[[tool.importlinter.contracts]]
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# 结构.md 第三部分依赖表：外部层与格式层的模块不依赖其他 cadx 模块。
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name = "delivery、library、answers、runs 互不依赖"
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type = "independence"
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modules = ["cadx.delivery", "cadx.library", "cadx.answers", "cadx.runs"]
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[[tool.importlinter.contracts]]
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# 同上，依赖表的另一半：它们也不引用上层和其余规划中的模块（独立契约只管它们之间）。
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name = "delivery、library、answers、runs 不引用其他 cadx 模块"
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type = "forbidden"
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source_modules = ["cadx.delivery", "cadx.library", "cadx.answers", "cadx.runs"]
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forbidden_modules = [
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"cadx.build", "cadx.review", "cadx.ceus", "cadx.segment", "cadx.llm", "cadx.ledger",
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"cadx.consult", "cadx.evaluate", "cadx.verdicts",
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]
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[[tool.importlinter.contracts]]
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# 结构.md 第三部分依赖表：ceus 是纯计算，不引用其他 cadx 模块（含 segment，分割结果由脚本传进来）。
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name = "ceus 不引用其他 cadx 模块"
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type = "forbidden"
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source_modules = ["cadx.ceus"]
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forbidden_modules = [
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"cadx.delivery", "cadx.library", "cadx.answers", "cadx.runs", "cadx.build", "cadx.review",
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"cadx.segment", "cadx.llm", "cadx.ledger", "cadx.consult", "cadx.evaluate", "cadx.verdicts",
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]
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[[tool.importlinter.contracts]]
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# 结构.md 第三部分依赖表：build 只依赖 delivery、library、answers、runs（ceus 落地时加入）。
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name = "build 只引用 delivery、library、answers、runs"
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type = "forbidden"
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source_modules = ["cadx.build"]
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forbidden_modules = [
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"cadx.review", "cadx.ceus", "cadx.segment", "cadx.llm", "cadx.ledger",
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"cadx.consult", "cadx.evaluate", "cadx.verdicts",
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]
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allow_indirect_imports = true
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[[tool.importlinter.contracts]]
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# 任务书 03：review（医生核对包）只读已构建好的两个库和 CEUS 运行，只依赖 library、answers、runs，
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# 不碰交付包（delivery）、不依赖 build 和 ceus。
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name = "review 只引用 library、answers、runs"
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type = "forbidden"
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source_modules = ["cadx.review"]
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forbidden_modules = [
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"cadx.delivery", "cadx.build", "cadx.ceus", "cadx.segment", "cadx.llm", "cadx.ledger",
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"cadx.consult", "cadx.evaluate", "cadx.verdicts",
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]
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[[tool.importlinter.contracts]]
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# 结构.md 第五部分：交付包的 Excel 只有 delivery 碰。
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name = "只有 delivery 引用 openpyxl"
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type = "forbidden"
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source_modules = ["cadx.library", "cadx.answers", "cadx.runs", "cadx.build", "cadx.review"]
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forbidden_modules = ["openpyxl"]
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allow_indirect_imports = true
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[[tool.importlinter.contracts]]
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# 结构.md 第五部分：写资料库的图片（去掉元数据）只有 library 碰。
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name = "只有 library 引用 PIL"
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type = "forbidden"
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source_modules = ["cadx.delivery", "cadx.answers", "cadx.runs", "cadx.build", "cadx.review"]
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forbidden_modules = ["PIL"]
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allow_indirect_imports = true
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