docs: document parse_document and bump version to 1.3.11

Changelog, README (install pin, capability table, usage, deployment recipe, operations notes, known limits), env example, architecture, roadmap, the M3 design erratum and the CHSAnalyzer3 consumption notes.
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# Research Wiki 索引
> 自动生成,更新时间:2026-10-22 04:02 UTC
> 自动生成,更新时间:2026-10-22 04:23 UTC
## design (49)
- [1.3.4 推理意图与测试证据设计](designs/2026-09-09-134-thinking-contracts-design.md) `design:2026-09-09-134-thinking-contracts-design`