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iomgaa 6bdb802f01 chore: track claude skills, tools, templates, reference code and research-wiki

- Add all claude skills (brainstorming, commit, debugging, TDD, etc.)
- Add claude hooks (pre-commit-guard, post-edit-quality)
- Add research templates (experiment plan, research brief, etc.)
- Add claude tools (arxiv/semantic_scholar/openalex fetch, wiki, exa)
- Add TRM4 reference implementation as algorithm fidelity baseline
- Add research-wiki content (plans, index, graph, query_pack)
- Update .gitignore to exclude .graphify_version runtime state

2026-07-06 20:59:03 -04:00

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name, description

name	description
commit	Use when committing code changes - enforces commit message format, safety checks, and prohibits AI signatures

Commit

Automatically generate a commit message and submit the code.

Workflow

Check status: run git status to inspect changes (do not use -uall)
Review diff: run git diff --staged and git diff to inspect the exact changes
Check style: run git log --oneline -10 to review recent commit style
Generate message: create a commit message that follows the rules below
Commit: stage the files and commit

Commit Message Rules

Format

<type>: <description>

[optional body]

Type Values

feat: new feature
fix: bug fix
docs: documentation update
refactor: refactor with no functional change
test: test-related change
chore: build / tooling / configuration
perf: performance optimization
ci: CI/CD related

Rules

The description must be written in English
Keep it under 72 characters
Use the imperative mood, for example "add user authentication" instead of "added user authentication"

Safety Rules

Caution

Never add any AI signature to a commit message:

Do not add Co-Authored-By: Claude

Do not add 🤖 Generated with...

Do not add any AI signature or marker

Sensitive File Check

Before committing, check whether any of the following files were accidentally added:

.env / .env.*
credentials.json
*_secret*
*.pem / *.key

If sensitive files are found, warn the user and wait for confirmation.

Examples

# Auto-generate a message
/commit

# Specify a message
/commit "feat: add user login"

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