iomgaa
6bdb802f01
- Add all claude skills (brainstorming, commit, debugging, TDD, etc.) - Add claude hooks (pre-commit-guard, post-edit-quality) - Add research templates (experiment plan, research brief, etc.) - Add claude tools (arxiv/semantic_scholar/openalex fetch, wiki, exa) - Add TRM4 reference implementation as algorithm fidelity baseline - Add research-wiki content (plans, index, graph, query_pack) - Update .gitignore to exclude .graphify_version runtime state
72 lines
2.1 KiB
Markdown
72 lines
2.1 KiB
Markdown
# graphify reference: extra exports and benchmark
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Load this when the user passed one of the export flags (`--wiki`, `--neo4j`, `--neo4j-push`, `--svg`, `--graphml`, `--mcp`), or when the corpus is large enough for the token-reduction benchmark. Each step runs only for its own flag.
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### Step 6b - Wiki (only if --wiki flag)
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**Only run this step if `--wiki` was explicitly given in the original command.**
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Run this before Step 9 (cleanup) so `.graphify_labels.json` is still available.
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```bash
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graphify export wiki
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```
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### Step 7 - Neo4j export (only if --neo4j or --neo4j-push flag)
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**If `--neo4j`** - generate a Cypher file for manual import:
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```bash
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graphify export neo4j
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```
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**If `--neo4j-push <uri>`** - push directly to a running Neo4j instance. Ask the user for credentials if not provided:
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```bash
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graphify export neo4j --push bolt://localhost:7687 --user neo4j --password PASSWORD
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```
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Default URI is `bolt://localhost:7687`, default user is `neo4j`. Uses MERGE - safe to re-run without creating duplicates.
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### Step 7b - SVG export (only if --svg flag)
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```bash
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graphify export svg
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```
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### Step 7c - GraphML export (only if --graphml flag)
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```bash
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graphify export graphml
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```
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### Step 7d - MCP server (only if --mcp flag)
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```bash
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python3 -m graphify.serve graphify-out/graph.json
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```
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This starts a stdio MCP server that exposes tools: `query_graph`, `get_node`, `get_neighbors`, `get_community`, `god_nodes`, `graph_stats`, `shortest_path`. Add to Claude Desktop or any MCP-compatible agent orchestrator so other agents can query the graph live.
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To configure in Claude Desktop, add to `claude_desktop_config.json`:
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```json
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{
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"mcpServers": {
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"graphify": {
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"command": "python3",
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"args": ["-m", "graphify.serve", "/absolute/path/to/graphify-out/graph.json"]
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}
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}
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}
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```
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### Step 8 - Token reduction benchmark (only if total_words > 5000)
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If `total_words` from `graphify-out/.graphify_detect.json` is greater than 5,000, run:
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```bash
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graphify benchmark
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```
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Print the output directly in chat. If `total_words <= 5000`, skip silently - the graph value is structural clarity, not token compression, for small corpora.
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