- Add all claude skills (brainstorming, commit, debugging, TDD, etc.) - Add claude hooks (pre-commit-guard, post-edit-quality) - Add research templates (experiment plan, research brief, etc.) - Add claude tools (arxiv/semantic_scholar/openalex fetch, wiki, exa) - Add TRM4 reference implementation as algorithm fidelity baseline - Add research-wiki content (plans, index, graph, query_pack) - Update .gitignore to exclude .graphify_version runtime state
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graphify reference: commit hook and native CLAUDE.md integration
Load this when the user asked to install the post-commit hook or wire graphify into a project's CLAUDE.md.
For git commit hook
Install a post-commit hook that auto-rebuilds the graph after every commit. No background process needed - triggers once per commit, works with any editor.
graphify hook install # install
graphify hook uninstall # remove
graphify hook status # check
After every git commit, the hook detects which code files changed (via git diff HEAD~1), re-runs AST extraction on those files, and rebuilds graph.json and GRAPH_REPORT.md. Doc/image changes are ignored by the hook - run /graphify --update manually for those.
If a post-commit hook already exists, graphify appends to it rather than replacing it.
For native CLAUDE.md integration
Run once per project to make graphify always-on in Claude Code sessions:
graphify claude install
This writes a ## graphify section to the local CLAUDE.md that instructs Claude to check the graph before answering codebase questions and rebuild it after code changes. No manual /graphify needed in future sessions.
graphify claude uninstall # remove the section