Files
mdpolish/scripts/run_clindb_arxiv_experiment.py
T

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Python

"""Run the approved arXiv component over the five local ClinDB paper copies."""
from __future__ import annotations
import argparse
import sys
from datetime import datetime
from pathlib import Path
from mdpolish.components import ArxivSubmissionStampComponent
from mdpolish.experiment import InputDocument, collect_tool_metadata, run_experiment
from mdpolish.models import RunStatus
from mdpolish.pipeline import Pipeline
_DOCUMENT_IDS = ("dmp", "ejhf", "jama", "sim", "springer")
def _parse_args() -> argparse.Namespace:
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("--run-id", required=True, help="safe identifier within today's artifact directory")
return parser.parse_args()
def main() -> int:
args = _parse_args()
repository_root = Path(__file__).resolve().parents[1]
documents = tuple(
InputDocument(
document_id=document_id,
source_path=repository_root / "data" / "md" / f"{document_id}.md",
source_label=f"data/md/{document_id}.md",
)
for document_id in _DOCUMENT_IDS
)
started_at = datetime.now().astimezone()
try:
result = run_experiment(
pipeline=Pipeline([ArxivSubmissionStampComponent()]),
documents=documents,
run_id=args.run_id,
artifacts_root=repository_root / "artifacts",
started_at=started_at,
tool=collect_tool_metadata(repository_root),
)
except Exception as error:
print(f"experiment failed: {type(error).__name__}: {error}", file=sys.stderr)
return 1
print(f"run_id={args.run_id}")
print(f"status={result.status.value}")
print(f"documents={result.document_count}")
print(f"changes={result.change_count}")
print(f"artifacts={result.run_directory}")
return 0 if result.status is RunStatus.SUCCESS else 1
if __name__ == "__main__":
raise SystemExit(main())